View source: R/segmentGenome.R
segmentGenome | R Documentation |
This function segments a genome into non-overlapping windows.
segmentGenome(genome, window, rm.gap = TRUE, rm.blacklist = TRUE)
genome |
a string with the name of the genome (e.g. 'hg19') |
window |
an integer with the window size |
rm.gap |
a logical indicating gap regions should be removed |
rm.blacklist |
a logical indicating blacklisted regions should be removed |
a GRanges object with the binned genome
Pedro L. Baldoni, pedrobaldoni@gmail.com
https://github.com/plbaldoni/epigraHMM
gr <- segmentGenome(genome = 'mm10', window = 500)
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