simScenarios: Multi-scenario simulator of single-cell epigenomic data

In plbaldoni/scChIPseqsim: Single-cell ChIP-seq Data Simulator Based on Pseudo-bulk Profiles

Description

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Usage

simScenarios(
  type,
  outdir,
  reference,
  seed = 2020,
  binSize = 500,
  shuffleChunks = 5000
)

Arguments

type	either 'scATACseq' or 'scChIPseq'
outdir	directory where the output files will be saved
reference	the reference set of peaks.
seed	an integer defining the seed
binSize	size of the bins of the final simulated dataset
shuffleChunks	size of the chunks that will be swapped across the genome (applicable for scChIPseq data only)

Details

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Value

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Author(s)

Pedro L. Baldoni, [e-mail]

plbaldoni/scChIPseqsim documentation built on June 11, 2020, 7:41 p.m.