README.md

In plger/plPlotTranscripts: Plot transcripts structure with plotly

plPlotTranscripts

Dynamic plots of transcripts structure using plotly

(static screenshot)

plPlotTranscripts displays transcripts intron-exon structures and allows to map colors, hover text and annotations to transcripts and/or exons.

For usage instructions and examples, see the vignette online (figures not rendered) or take a look at vignette("plPlotTranscripts").

Required R packages

• GenomicRanges
• plotly
• seriation
• viridis (optional; for color mapping)
• rtracklayer (optional; for importing gff files to GRanges)

Installation

library(devtools)
install_github("plger/plPlotTranscripts", build_vignettes=T)

If you get an error during the building of the vignettes, you probably need to install phantomjs first through webshot::install_phantomjs() (alternatively, set build_vignettes=F).

plger/plPlotTranscripts documentation built on May 8, 2019, 12:57 p.m.