Files in pliu55/pram
Pooling RNA-seq datasets for assembling transcript models

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/Param.R R/Transcript.R R/buildModel.R R/defIgRanges.R R/evalModel.R R/prepIgBam.R R/runPRAM.R R/selModel.R R/util.R README.md
inst/CITATION
inst/extdata/bam/CMPRep1.sortedByCoord.clean.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
inst/extdata/bam/CMPRep1.sortedByCoord.raw.bam
inst/extdata/bam/CMPRep2.sortedByCoord.clean.bam
inst/extdata/bam/CMPRep2.sortedByCoord.raw.bam
inst/extdata/benchmark/plcf.tsv
inst/extdata/benchmark/tgt.tsv
inst/extdata/chromsize/hg19.tsv.gz
inst/extdata/chromsize/hg38.tsv.gz
inst/extdata/chromsize/mm10.tsv.gz
inst/extdata/chromsize/mm9.tsv.gz
inst/extdata/demo/SZP.bam
inst/extdata/demo/TLC.bam
inst/extdata/demo/in.gtf
inst/extdata/gtf/defIgRanges_in.gtf
inst/extdata/gtf/gnc_v24_minus_chr18.gtf
inst/extdata/gtf/ig_mm10_chr12.gtf
inst/extdata/gtf/selModel_in.gtf
inst/extdata/gtf/selModel_out.gtf
inst/extdata/vignettes/pram.pdf man/buildModel.Rd man/defIgRanges.Rd man/evalModel.Rd man/prepIgBam.Rd man/runPRAM.Rd man/selModel.Rd tests/runTests.R tests/testthat/test-Transcript.R tests/testthat/test-buildModel.R tests/testthat/test-defIgRanges.R tests/testthat/test-evalModel.R tests/testthat/test-prepIgBam.R tests/testthat/test-runPRAM.R tests/testthat/test-selModel.R vignettes/pram.Rmd
vignettes/workflow_noScreen.jpg
pliu55/pram documentation built on March 30, 2024, 7:24 p.m.