Files in pliu55/pram
Pooling RNA-seq datasets for assembling transcript models
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/Param.R
R/Transcript.R
R/buildModel.R
R/defIgRanges.R
R/evalModel.R
R/prepIgBam.R
R/runPRAM.R
R/selModel.R
R/util.R
README.md
inst/CITATION
inst/extdata/bam/CMPRep1.sortedByCoord.clean.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
inst/extdata/bam/CMPRep1.sortedByCoord.raw.bam
inst/extdata/bam/CMPRep2.sortedByCoord.clean.bam
inst/extdata/bam/CMPRep2.sortedByCoord.raw.bam
inst/extdata/benchmark/plcf.tsv
inst/extdata/benchmark/tgt.tsv
inst/extdata/chromsize/hg19.tsv.gz
inst/extdata/chromsize/hg38.tsv.gz
inst/extdata/chromsize/mm10.tsv.gz
inst/extdata/chromsize/mm9.tsv.gz
inst/extdata/demo/SZP.bam
inst/extdata/demo/TLC.bam
inst/extdata/demo/in.gtf
inst/extdata/gtf/defIgRanges_in.gtf
inst/extdata/gtf/gnc_v24_minus_chr18.gtf
inst/extdata/gtf/ig_mm10_chr12.gtf
inst/extdata/gtf/selModel_in.gtf
inst/extdata/gtf/selModel_out.gtf
inst/extdata/vignettes/pram.pdf
man/buildModel.Rd
man/defIgRanges.Rd
man/evalModel.Rd
man/prepIgBam.Rd
man/runPRAM.Rd
man/selModel.Rd
tests/runTests.R
tests/testthat/test-Transcript.R
tests/testthat/test-buildModel.R
tests/testthat/test-defIgRanges.R
tests/testthat/test-evalModel.R
tests/testthat/test-prepIgBam.R
tests/testthat/test-runPRAM.R
tests/testthat/test-selModel.R
vignettes/pram.Rmd
vignettes/workflow_noScreen.jpg
