API for pllittle/ROKETworkflow
ROKET analysis workflow
| Global functions | |
|---|---|
| ANA_TEST_final | Man page Source code |
| RDA_REG_final | Source code |
| RDA_calcTMB | Source code |
| RDA_getCYT | Source code |
| RDA_getEUC_DIST | Source code |
| RDA_getOT_DIST | Source code |
| RDA_makeCOVAR | Source code |
| RDA_prepCLIN | Source code |
| calc_full_DIST | Man page Source code |
| comb_geneSim | Source code |
| down_PanCan | Source code |
| down_SPMs | Source code |
| get_GTF | Source code |
| get_PATH | Source code |
| get_REF | Source code |
| get_fNULL_MOD | Source code |
| get_full_geneSim_ME | Source code |
| get_full_geneSim_path | Source code |
| get_geneSim_ME | Source code |
| get_geneSim_path | Source code |
| keep_GDCFILTER | Source code |
| keep_varClass | Source code |
| make_DP_VAF | Source code |
| make_SPM_mat | Source code |
| make_sampID | Source code |
| make_tb1 | Source code |
| name_TUMORTYPES | Source code |
| new_ANA_AGG | Man page Source code |
| new_ANA_COV | Source code |
| prep_SPMs | Source code |
| remove_lowImpact | Source code |
| run_full_geneSim | Man page Source code |
| setdirs | Man page Source code |
| smart_DTR | Source code |
