calc_full_DIST: calc_full_DIST
In pllittle/ROKETworkflow: ROKET analysis workflow
View source: R/ROKETworkflow.R
calc_full_DIST R Documentation
calc_full_DIST
Description
calc_full_DIST
Usage
calc_full_DIST(my_dirs, rmWGA = TRUE, min_gene_mut, LAMBDA, ncores = 1)
Arguments
my_dirs
A list generated by setdirs()
of directories specific to a cancer type
rmWGA
Boolean set to TRUE to exclude WGA samples
min_gene_mut
A non-negative integer to filter
genes, based on mutation frequency, to include in distance
calculations
LAMBDA
A positive numeric value or Inf to
indicate unbalanced or balanced optimal transport distance
calculation, respectively.
ncores
A positive integer to specify the number of
threads to decrease computational runtime.
pllittle/ROKETworkflow documentation built on Sept. 27, 2022, 2:15 p.m.
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View source: R/ROKETworkflow.R
| calc_full_DIST | R Documentation |
calc_full_DIST
Description
calc_full_DIST
Usage
calc_full_DIST(my_dirs, rmWGA = TRUE, min_gene_mut, LAMBDA, ncores = 1)
Arguments
my_dirs |
A list generated by |
rmWGA |
Boolean set to TRUE to exclude WGA samples |
min_gene_mut |
A non-negative integer to filter genes, based on mutation frequency, to include in distance calculations |
LAMBDA |
A positive numeric value or |
ncores |
A positive integer to specify the number of threads to decrease computational runtime. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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