The 'ploidyverse' is a group of R packages for the analysis of genetic data from diploid, polyploid, and mixed-ploidy samples using standardized input and output formats. The 'ploidyverseClasses' package defines S4 classes extending the collapsedVcf class from 'VariantAnnotation', in order to facilitate import and export of data among 'ploidyverse' packages and between the 'ploidyverse' and other software. A file format specification is also included, describing requirements and general advice for VCF files in the 'ploidyverse'.
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