Man pages for pmbrophy/mzDataTable
Import and convert raw mass spectrometry data formats
| C_normCentroidMz | Rcpp function for normCentroidMz SEXP |
| computeSimilarity | Compute Spectral Similarity |
| dot-check_mzDataTable | Check mzObj for data structure |
| dot-C_normCentroidMz | C++ Version: Calculate global m/z grid for centroids |
| dot-dropEmptyCols | Drop empty columns from data.frame |
| dot-formatHeader | Format header from mzR::header() |
| dot-getBPI_dskF | Calculate total ion chromatogram from disk.frame |
| dot-getBPI_dt | Calculate total ion chromatogram from data.table |
| dot-getiRange | Get index range from 'seqNum' |
| dot-getMzRange | Get mz start and stop as vector |
| dot-getNumFromSpectrumId | Convert spectrumId strings to numerics |
| dot-getSumSpectrum_dskF | Pre-process mzDskF for sum spectrum |
| dot-getSumSpectrum_dt | Pre-process mzDt for sum spectrum |
| dot-getTIC_dskF | Calculate total ion chromatogram from disk.frame |
| dot-getTIC_dt | Calculate total ion chromatogram from data.table |
| dot-gettRange | Get time range from 'retentionTime' |
| dot-getXIC_dskF | Get XIC from disk.frame |
| dot-getXIC_dt | Get XIC from data.table |
| dot-grid_matrix | Grid spectra to equal lengths |
| dot-inGlobalEnv | Check if all objects are in .GlobalEnv |
| dot-mzML2csvChunk | Write data.table of mzML/mzXML data to a .csv |
| dot-mzML2diskFrameChunk | Write data.table of mzML/mzXML data to a disk.frame |
| dot-normalizeEachSpectrum_dt | Normalize a mzDt by seqNum |
| dot-normalizeSpectrum_dt | Normalize a mzDt |
| dot-normCentroidMz | DEPRICATED: Calculate global m/z grid for centroids |
| dot-normProfileMz | Calculate global m/z grid for profile mode data |
| dot-scanChunker | Scan Chunker |
| dot-specSim | Calculate spectral similarity |
| dot-splitDFbyVectorList | select data.frame by row |
| dot-splitIndex | Split a vector into groups |
| getBPI | Get Base Peak Intensity |
| getSumSpectrum | Get Sum Mass Spectrum |
| getTIC | Calculate total ion chromatogram |
| getXIC | Get XIC from data.table or disk.frame |
| indexMasterSpectrum | Index the m/z axis |
| mzML2csv | Convert .mzML file to CSV |
| mzML2dataTable | Import a mzML file and format the data into a data.table |
| mzML2diskFrame | Convert mz data to disk.frame |
| similarity2SquareMatrix | Generate square similarity matrix |
