getWeights: Get precalculated statistical test weights
In pmoulos/metaseqR2: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
getWeights R Documentation
Get precalculated statistical test
weights
Description
This function returns pre-calculated weights
for human, chimpanzee, mouse, fruitfly and
arabidopsis based on the performance of
simulated datasets estimated from real data
from the ReCount database
(http://bowtie-bio.sourceforge.net/recount/).
Currently pre-calculated weights are available only
when all six statistical tests are used and for
normalization with EDASeq. For other combinations,
use the estimateAufcWeights function.
Usage
getWeights(org = c("human", "chimpanzee", "mouse",
"fruitfly", "arabidopsis", "rat"))
Arguments
org
"human", "chimpanzee",
"mouse", "fruitfly", "arabidopsis"
or "rat".
Value
A named vector of convex weights.
Author(s)
Panagiotis Moulos
Examples
wh <- getWeights("human")
pmoulos/metaseqR2 documentation built on March 14, 2024, 8:15 p.m.
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| getWeights | R Documentation |
Get precalculated statistical test weights
Description
This function returns pre-calculated weights
for human, chimpanzee, mouse, fruitfly and
arabidopsis based on the performance of
simulated datasets estimated from real data
from the ReCount database
(http://bowtie-bio.sourceforge.net/recount/).
Currently pre-calculated weights are available only
when all six statistical tests are used and for
normalization with EDASeq. For other combinations,
use the estimateAufcWeights function.
Usage
getWeights(org = c("human", "chimpanzee", "mouse",
"fruitfly", "arabidopsis", "rat"))
Arguments
org |
|
Value
A named vector of convex weights.
Author(s)
Panagiotis Moulos
Examples
wh <- getWeights("human")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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