Files in pmoulos/metaseqr
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
DESCRIPTION
NAMESPACE
R/metaseqR-package.R
R/metaseqr-data.R
R/metaseqr.annotation.R
R/metaseqr.argcheck.R
R/metaseqr.count.R
R/metaseqr.export.R
R/metaseqr.filter.R
R/metaseqr.json.R
R/metaseqr.main.R
R/metaseqr.meta.R
R/metaseqr.norm.R
R/metaseqr.plot.R
R/metaseqr.query.R
R/metaseqr.sim.R
R/metaseqr.stat.R
R/metaseqr.util.R
R/zzz.R
README.md
data/datalist
data/hg19.exon.data.rda
data/mm9.gene.data.rda
inst/CITATION
inst/NEWS
inst/loader.gif
inst/logo.png
inst/metaseqr_report.html
inst/styles.css
inst/unitTests/test_estimate_aufc_weights.R
inst/unitTests/test_metaseqr.R
man/as.class.vector.Rd
man/build.export.Rd
man/calc.f1score.Rd
man/calc.otr.Rd
man/cddat.Rd
man/cdplot.Rd
man/check.contrast.format.Rd
man/check.file.args.Rd
man/check.graphics.file.Rd
man/check.graphics.type.Rd
man/check.libsize.Rd
man/check.main.args.Rd
man/check.num.args.Rd
man/check.packages.Rd
man/check.parallel.Rd
man/check.text.args.Rd
man/combine.bonferroni.Rd
man/combine.maxp.Rd
man/combine.minp.Rd
man/combine.simes.Rd
man/combine.weight.Rd
man/construct.gene.model.Rd
man/construct.utr.model.Rd
man/diagplot.avg.ftd.Rd
man/diagplot.boxplot.Rd
man/diagplot.cor.Rd
man/diagplot.de.heatmap.Rd
man/diagplot.edaseq.Rd
man/diagplot.filtered.Rd
man/diagplot.ftd.Rd
man/diagplot.mds.Rd
man/diagplot.metaseqr.Rd
man/diagplot.noiseq.Rd
man/diagplot.noiseq.saturation.Rd
man/diagplot.pairs.Rd
man/diagplot.roc.Rd
man/diagplot.venn.Rd
man/diagplot.volcano.Rd
man/disp.Rd
man/downsample.counts.Rd
man/estimate.aufc.weights.Rd
man/estimate.sim.params.Rd
man/filter.exons.Rd
man/filter.genes.Rd
man/filter.high.Rd
man/filter.low.Rd
man/fisher.method.Rd
man/fisher.method.perm.Rd
man/fisher.sum.Rd
man/get.annotation.Rd
man/get.arg.Rd
man/get.biotypes.Rd
man/get.bs.organism.Rd
man/get.dataset.Rd
man/get.defaults.Rd
man/get.ensembl.annotation.Rd
man/get.exon.attributes.Rd
man/get.gc.content.Rd
man/get.gene.attributes.Rd
man/get.host.Rd
man/get.preset.opts.Rd
man/get.strict.biofilter.Rd
man/get.transcript.utr.attributes.Rd
man/get.ucsc.annotation.Rd
man/get.ucsc.credentials.Rd
man/get.ucsc.dbl.Rd
man/get.ucsc.organism.Rd
man/get.ucsc.query.Rd
man/get.ucsc.tabledef.Rd
man/get.ucsc.tbl.tpl.Rd
man/get.valid.chrs.Rd
man/get.weights.Rd
man/graphics.close.Rd
man/graphics.open.Rd
man/hg19.exon.counts.Rd
man/libsize.list.hg19.Rd
man/libsize.list.mm9.Rd
man/load.bs.genome.Rd
man/log2disp.Rd
man/make.avg.expression.Rd
man/make.contrast.list.Rd
man/make.export.list.Rd
man/make.fold.change.Rd
man/make.grid.Rd
man/make.highcharts.points.Rd
man/make.html.body.Rd
man/make.html.cells.Rd
man/make.html.header.Rd
man/make.html.rows.Rd
man/make.html.table.Rd
man/make.matrix.Rd
man/make.path.struct.Rd
man/make.permutation.Rd
man/make.project.path.Rd
man/make.report.messages.Rd
man/make.sample.list.Rd
man/make.sim.data.sd.Rd
man/make.sim.data.tcc.Rd
man/make.stat.Rd
man/make.transformation.Rd
man/make.venn.areas.Rd
man/make.venn.colorscheme.Rd
man/make.venn.counts.Rd
man/make.venn.pairs.Rd
man/meta.perm.Rd
man/meta.test.Rd
man/meta.worker.Rd
man/metaseqR-package.Rd
man/metaseqr.Rd
man/mlfo.Rd
man/mm9.gene.counts.Rd
man/nat2log.Rd
man/normalize.deseq.Rd
man/normalize.edaseq.Rd
man/normalize.edger.Rd
man/normalize.nbpseq.Rd
man/normalize.noiseq.Rd
man/read.targets.Rd
man/read2count.Rd
man/reduce.exons.Rd
man/reduce.gene.data.Rd
man/sample.list.hg19.Rd
man/sample.list.mm9.Rd
man/set.arg.Rd
man/stat.bayseq.Rd
man/stat.deseq.Rd
man/stat.edger.Rd
man/stat.limma.Rd
man/stat.nbpseq.Rd
man/stat.noiseq.Rd
man/validate.alg.args.Rd
man/validate.list.args.Rd
man/wapply.Rd
man/wp.adjust.Rd
tests/runTests.R
vignettes/metaseqr-pdf.Rnw
