Man pages for pmpsa-hpc/NPAModels
Contains utils for loading and manipulating two-layers structure network models
| exportBackbone | Exports the network backbone as tsv file |
| exportDownstreams | Exports the network downstreams as tsv file |
| getLQ | Get precomputed matrix for fast NPA computations |
| Hs__CFA__Apoptosis__0__0__1.rda | Apoptosis Network for Homo sapiens (version 0.0.1) |
| Hs__CPR__Cell_Cycle__0__0__1.rda | Cell Cycle network for Homo sapiens (version 0.0.1) |
| Hs__CPR__Jak_Stat__0__0__1.rda | Jak Stat network for Homo sapiens (version 0.0.1) |
| Hs__CST__Oxidative_Stress__0__0__1.rda | Oxidative Stress network for Homo sapiens (version 0.0.1) |
| Hs__CST__Xenobiotic_Metabolism_Response__0__0__1.rda | Xenobiotic Metabolism Response for Homo sapiens (version... |
| Hs__IPN__Epithelial_Innate_Immune_Activation__0__0__1.rda | Epithelial Innate Immune Activation network for Homo sapiens... |
| Hs__IPN__Neutrophil_Signaling__0__0__1.rda | Neutrophil Signaling network for Homo sapiens (version 0.0.1) |
| Hs__TRA__ECM_Degradation__0__0__1.rda | ECM Degradation network for Homo sapiens (version 0.0.1) |
| list_data | Retrieve the list of rda files |
| list_families | Retrieves the list of available families |
| list_models | Retrieves the list of models |
| load_model | Retrieves an NPA model object to be used with NPA package |
| load_models | Retrieves the list of NPAModels R6 class objects for a given... |
| minimizeNetwork | Reduces the slots of a network object to the minimum required... |
| Mm__CFA__Apoptosis__0__0__1.rda | Apoptosis Network for Mus musculus (version 0.0.1) |
| Mm__CPR__Cell_Cycle__0__0__1.rda | Cell Cycle network for Mus musculus (version 0.0.1) |
| Mm__CPR__Jak_Stat__0__0__1.rda | Jak Stat network for Homo sapiens (version 0.0.1) |
| Mm__CST__Oxidative_Stress__0__0__1.rda | Oxidative Stress network for Mus musculus (version 0.0.1) |
| Mm__CST__Xenobiotic_Metabolism_Response__0__0__1.rda | Xenobiotic Metabolism Response for Mus musculus (version... |
| Mm__IPN__Epithelial_Innate_Immune_Activation__0__0__1.rda | Epithelial Innate Immune Activation network for Mus musculus... |
| Mm__IPN__Neutrophil_Signaling__0__0__1.rda | Neutrophil Signaling network for Mus musculus (version 0.0.1) |
| Mm__TRA__ECM_Degradation__0__0__1.rda | ECM Degradation network for Mus musculus (version 0.0.1) |
| NPAModel | Class providing object with methods for handling a network... |
| preprocessNetworks | Preprocess network data. |
