decode: Local and global decoding

In pneff93/HMM: Fitting a Hidden Markov Model

Description

Calculation of local and global decoding given the dataset and the coresponding parameters of the HMM

Usage

decode(x, m, L1, L2, L3 = NULL, L4 = NULL, L5 = NULL, gamma, delta,
  theta, multi = FALSE)

Arguments

x	a sample of a Hidden Markov Model
m	the number of states
L1	likelihood of the first hidden state
L2	likelihood of the second hidden state
L3	optional. likelihood of the third hidden state
L4	optional. likelihood of the 4th hidden state
L5	optional. likelihood of the 5th hidden state
gamma	estimated Gamma matrix from previous estimation
delta	estimated Delta vector from previous estimation
theta	estimated Theta values from previous estimation
multi	parameter. TRUE if multifactor HMM() is used

Value

Returns the path of the local and global decoding as well as a statement, whether the two paths differ.

pneff93/HMM documentation built on Oct. 26, 2019, 8:16 a.m.