Files in pneuvial/adjclust
Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/adjclust.R
R/buildHeap.R
R/chac.R
R/helpers.R
R/hicClust.R
R/plotSim.R
R/snpClust.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
inst/CITATION
inst/WORDLIST
inst/extdata/hic_imr90_40_XX.rda
inst/extdata/res_adjclust_0.3.0.rds
inst/extdata/sample.txt
inst/system/createExampleLDData.R
inst/system/create_hic_chrXchrX.R
inst/system/create_prevfit.R
man/adjClust.Rd
man/chac.Rd
man/figures/README-adjClust-1.png
man/figures/README-hicClust-1.png
man/figures/README-hicClust-2.png
man/figures/README-hicClust-3.png
man/figures/README-snpClust-1.png
man/figures/README-snpClust-2.png
man/figures/README-snpClust-3.png
man/hicClust.Rd
man/plotSim.Rd
man/select.Rd
man/snpClust.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/adjClustFast.cpp
src/mainFunctions.c
tests/testthat.R
tests/testthat/test_adjClust.R
tests/testthat/test_adjclust_equivalentTo_hclust.R
tests/testthat/test_adjclust_equivalentTo_rioja.R
tests/testthat/test_ascendingCompatibility.R
tests/testthat/test_chac.R
tests/testthat/test_correct.R
tests/testthat/test_corrected_plot.R
tests/testthat/test_cuttree.R
tests/testthat/test_dense_sparse_comparison.R
tests/testthat/test_final_height.R
tests/testthat/test_hicClust.R
tests/testthat/test_modify.R
tests/testthat/test_plotSim.R
tests/testthat/test_similarity_equivalentTo_dissimilarity.R
tests/testthat/test_snpClust.R
tests/testthat/test_snpClust_NA-in-LD.R
tests/testthat/test_warning_with_decreasing_height_plots.R
vignettes/hicClust.Rmd
vignettes/notesCHAC.Rmd
vignettes/snpClust.Rmd
