Files in pneuvial/adjclust

Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/adjclust.R R/buildHeap.R R/chac.R R/helpers.R R/hicClust.R R/plotSim.R R/snpClust.R README.Rmd README.md

_pkgdown.yml

codecov.yml

inst/CITATION

inst/WORDLIST

inst/extdata/hic_imr90_40_XX.rda

inst/extdata/res_adjclust_0.3.0.rds

inst/extdata/sample.txt

inst/system/createExampleLDData.R inst/system/create_hic_chrXchrX.R inst/system/create_prevfit.R man/adjClust.Rd man/chac.Rd

man/figures/README-adjClust-1.png

man/figures/README-hicClust-1.png

man/figures/README-hicClust-2.png

man/figures/README-hicClust-3.png

man/figures/README-snpClust-1.png

man/figures/README-snpClust-2.png

man/figures/README-snpClust-3.png

man/hicClust.Rd man/plotSim.Rd man/select.Rd man/snpClust.Rd

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/adjClustFast.cpp

src/mainFunctions.c

tests/testthat.R tests/testthat/test_adjClust.R tests/testthat/test_adjclust_equivalentTo_hclust.R tests/testthat/test_adjclust_equivalentTo_rioja.R tests/testthat/test_ascendingCompatibility.R tests/testthat/test_chac.R tests/testthat/test_correct.R tests/testthat/test_corrected_plot.R tests/testthat/test_cuttree.R tests/testthat/test_dense_sparse_comparison.R tests/testthat/test_final_height.R tests/testthat/test_hicClust.R tests/testthat/test_modify.R tests/testthat/test_plotSim.R tests/testthat/test_similarity_equivalentTo_dissimilarity.R tests/testthat/test_snpClust.R tests/testthat/test_snpClust_NA-in-LD.R tests/testthat/test_warning_with_decreasing_height_plots.R vignettes/hicClust.Rmd vignettes/notesCHAC.Rmd vignettes/snpClust.Rmd

pneuvial/adjclust documentation built on Feb. 18, 2024, 8:11 p.m.