In pnolain/popkinr: Shiny applications for pharmacometrics

knitr::opts_chunk$set(eval = FALSE)

NONMEM toolbox

nonmem_toolbox()

nonmem_toolbox(nonmem_exe = "/opt/nm/run/nmfe74",
               nmcheck_exe = "/opt/nm/tr/NMTRAN.exe")

nonmem_toolbox(nonmem_exe = "/usr/local/bin/nmr",
               nonmem_call = "{nonmem_exe} -local {control_file}",
               nmcheck_exe = "/usr/local/bin/nmr",
               nmcheck_call = "{nmcheck_exe} -test {control_file}")

NONMEM monitor

Start runs with NONMEM executable

Set nonmem_exe argument to your NONMEM executable path.

nonmem_monitor(nonmem_exe = "/opt/nm/run/nmfe74",
               nmcheck_exe = "/opt/nm/tr/NMTRAN.exe",
               nonmem_parafile = "/opt/nm/runfiles/mpilinux8.pnm")

Start runs with PsN

Set nonmem_exe argument to your PsN execute command.

nonmem_monitor(nonmem_exe = "/usr/local/bin/execute",
               nonmem_call = "{nonmem_exe} {control_file} -nodes={n_nodes}",
               nmcheck_exe = "/opt/nm/tr/NMTRAN.exe")