int_baseline_all: Fully work up a complete data set of integrating sphere data

In poales/integratingSphere: Collects integrating sphere data for use with chlorophyll fluorescence

Fully work up a complete data set of integrating sphere data

Description

A fully-featured function that accepts a series of folders to automatically work up. Pass in the FOLDER location of your baseline (no plant) reflectance, plant reflectance and plant transmittance.

Usage

int_baseline_all(
  locationBaseline,
  locationReflectance,
  locationTransmittance,
  Averaging = 1,
  writeLoc = NULL,
  writePrefix = "",
  licordat = T,
  useSharkeySpec = F
)

Arguments

Averaging	a variable that reflects how many wavelengths will be averaged together. Default: 1, so 1 point per wavelength
writeLoc	If provided, will write out the collected data to the chosen directory. Provides csvs for reflectance, transmittance, baseline, and compiled.
writePrefix	Standard text added to the front of filenames for written out files.
licordat	Show or hide the Li-6800 LED spectra

poales/integratingSphere documentation built on Oct. 6, 2022, 3:34 p.m.