tSNE_multipleParameters: Multiple-parameter tSNE Run

In polyak-lab/felipeCommonFunctions: Felipe Common Functions

Description

Automated tSNE runs through a set of parameters specified by the user

Usage

tSNE_multipleParameters(matrix, perplexities, thetas, iterations, clusterDF,
  filename = "./plots/dimension-reduction/tSNE.pdf")

Arguments

matrix	Matrix on which the runs of tSNE will be performed. Should have samples as columns
perplexities	Vector of the perplexities to attempt
thetas	Vector of the thetas to try
iterations	Max Number of iterations (defaults to 800)
clusterDF	Cluster data frame. Rows should be sample names and cells should have the name of the cluster for each sample

Author(s)

Felipe Flores

polyak-lab/felipeCommonFunctions documentation built on May 26, 2019, 12:32 a.m.