Files in pooranis/maaslin
Maaslin
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AnalysisModules.R
R/BoostGLM.R
R/Constants.R
R/IO.R
R/Legacy.R
R/Maaslin.R
R/MaaslinPlots.R
R/Misc.R
R/SummarizeMaaslin.R
R/Utility.R
R/ValidateData.R
README.md
doc/Merge_Metadata_Read_Me.txt
exec/MaaslinToGraphlanAnnotation.py
exec/PCLToGraphlanCoreGene.py
exec/merge_metadata.py
exec/transpose.py
inst/additionalTests/answers/FuncSummarizeDirectory-1FileAltKeyResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-1FileAltSigResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-1FileResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-3FileAltKeyResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-3FileAltSigResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-3FileResult.txt
inst/additionalTests/answers/FuncSummarizeDirectory-NoFileAltKeyAnswer.txt
inst/additionalTests/answers/FuncSummarizeDirectory-NoFileAltSigAnswer.txt
inst/additionalTests/answers/FuncSummarizeDirectory-NoFileAnswer.txt
inst/additionalTests/answers/FuncWriteMatrices.read.config
inst/additionalTests/answers/FuncWriteMatrices1.tsv
inst/additionalTests/answers/FuncWriteMatrices2.tsv
inst/additionalTests/answers/FuncWriteMatrixToReadConfigFile_AllAnswer.read.config
inst/additionalTests/answers/FuncWriteMatrixToReadConfigFile_AppendAnswer.read.config
inst/additionalTests/answers/FuncWriteMatrixToReadConfigFile_SimpleAnswer.read.config
inst/additionalTests/answers/FuncWriteTableTempDF1.txt
inst/additionalTests/answers/FuncWriteTableTempDF2.txt
inst/additionalTests/answers/FuncWriteTemp1.txt
inst/additionalTests/answers/FuncWriteTemp2.txt
inst/additionalTests/answers/FuncWriteTempDF1.txt
inst/additionalTests/answers/FuncWriteTempDF2.txt
inst/additionalTests/input/1Matrix.read.config
inst/additionalTests/input/2Matrix.read.config
inst/additionalTests/input/3Matrix.read.config
inst/additionalTests/input/TestMaaslin.read.config
inst/additionalTests/input/TestMaaslin.tsv
inst/additionalTests/input/TestMatrix.tsv
inst/additionalTests/input/funcSummarizeDirectory/1/FuncSummarizeDirectory-1.txt
inst/additionalTests/input/funcSummarizeDirectory/3/FuncSummarizeDirectory-1.txt
inst/additionalTests/input/funcSummarizeDirectory/3/FuncSummarizeDirectory-2.txt
inst/additionalTests/input/funcSummarizeDirectory/3/FuncSummarizeDirectory-3.txt
inst/additionalTests/test-AnalysisModules.R
inst/additionalTests/test-BoostGLM.R
inst/additionalTests/test-IO.R
inst/additionalTests/test-Maaslin.R
inst/additionalTests/test-SummarizeMaaslin.R
inst/additionalTests/test-Utility.R
inst/additionalTests/test-ValidateData.R
inst/extdata/for_merge_metadata/maaslin_demo_measurements.pcl
inst/extdata/for_merge_metadata/maaslin_demo_metadata.metadata
inst/extdata/maaslin_demo2.R
inst/extdata/maaslin_demo2.args
inst/extdata/maaslin_demo2.pcl
inst/extdata/maaslin_demo2.read.config
inst/extdata/maaslin_demo2.tsv
inst/unitTests/test_Maaslin.R
man/Maaslin-package.Rd
man/Maaslin.Rd
tests/RunTests.R
tests/maaslin_results.txt
vignettes/maaslin.Rmd
