plot_density_: Plot density estimates

In powellgenomicslab/Nebulosa: Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation

Plot density estimates

Description

Plot density estimates

Usage

plot_density_(
  z,
  feature,
  cell_embeddings,
  dim_names,
  shape,
  size,
  legend_title,
  pal = c("viridis", "magma", "cividis", "inferno", "plasma"),
  raster,
  ...
)

Arguments

z	Vector with density values for each cells
feature	Name of the feature being plotted
cell_embeddings	Matrix with cell embeddings
dim_names	Names of the dimensions from the cell embeddings
shape	Geom shape
size	Geom size
legend_title	String used as legend title
pal	String specifying the viridis color palette to use
raster	Rasterise plot
...	Further scale arguments passed to scale_color_viridis_c

Value

A ggplot object

Author(s)

Jose Alquicira-Hernandez

powellgenomicslab/Nebulosa documentation built on March 3, 2024, 8:23 p.m.