Man pages for powellgenomicslab/scPred
scPred - accurate supervised method for cell-type classification from single-cell RNA-seq data
| crossTab | Gets contingency table |
| crossTab-Seurat-method | Gets contingency table |
| dot-plot_probabilities | Plot training probabilities |
| get_classifiers | Get classification models |
| get_classifiers-scPred-method | Get classification models |
| get_classifiers-Seurat-method | Get classification models |
| getFeatureSpace | Get discriminant feature space |
| get_metadata | Get metadata from scPred object |
| get_metadata-scPred-method | Get metadata from scPred object |
| get_metadata-Seurat-method | Get metadata from scPred object |
| get_probabilities | Get training probabilities |
| get_probabilities-scPred-method | Get training probabilities |
| get_probabilities-Seurat-method | Get training probabilities |
| get_scpred | Get scPred object |
| get_scpred-Seurat-method | Get scPred object |
| pbmc_1 | A random sample of PBMCs from individual 1 |
| pbmc_2 | A random sample of PBMCs from individual 2 |
| plot_probabilities | Plot training probabilities |
| plot_probabilities-scPred-method | Plot training probabilities |
| plot_probabilities-Seurat-method | Plot training probabilities |
| print.scPred | show |
| project_query | Project query data onto PCA reference |
| scPred | Definition of 'scPred' class |
| scPredict | Predict cell classes from a new dataset using a trained model |
| show-scPred-method | show |
| trainModel | Train a prediction model |
