crossTab-Seurat-method: Gets contingency table

In powellgenomicslab/scPred: scPred - accurate supervised method for cell-type classification from single-cell RNA-seq data

Description

Creates a cross table using two columns from the metadata

Usage

## S4 method for signature 'Seurat'
crossTab(
  object,
  true = NULL,
  pred = NULL,
  output = c("counts", "fraction", "prop"),
  digits = 2
)

Arguments

object	Seurat object
true	Column name in meta.data slot that corresponds to the true known classes
pred	Column name in meta.data slot that corresponds to the predicted classes if they have been assigned independently from the scPredict() function
output	Return counts, fraction, or proportions? Default: counts
digits	If proportions are returned, number of digits to round numbers

Value

A contingency table

Author(s)

Jose Alquicira Hernandez

powellgenomicslab/scPred documentation built on July 16, 2021, 12:14 a.m.