| analyze_cosinor_design | Analyze Cosinor Design |
| char2sorted_factor | Converts character vector to sorted factor |
| circular_spectral_colors | Computes color components along a circular spectrum |
| empirical_fdr | Calculate Empirical False Discovery Rate (FDR) |
| fisher_test_df | Performs Fisher test for odds difference of condition 1... |
| forge_polar_amp_df | Constructs data_frame suitable for polar circadian phase... |
| forge_polar_phaseint_df | Constructs data_frame suitable for polar circadian phase... |
| gene_names_to_entrez | Search Entrez IDs for gene names that are not necessarily MGI... |
| interleave_segments | Interleave segments of a matrix based on specified indices |
| inverse | Create inverse function |
| make_index_vector | Make a vector of stretches of indices of contigs satisfying a... |
| matrixslices | Matrix columnwise slice centered on different positions for... |
| my_exonsByGene2 | List of genes with exons |
| myfrac | Print the fraction of TRUEs in a vector of logicals |
| my_intronsByGene | List of genes with introns |
| my_intronsByGene2 | List of genes with introns |
| mysignedcircpairdist.ct | Signed differences in phase (0-24 hrs scale) |
| qmetade | Perform p value meta analysis using MetaDE |
| reduce_gene_table_ambiguity | Remove some ambiguous entries in a gene translation data... |
| roundn | Round to nearest integer multiple of n |
| running_average | Running average |
| sel_padj | Compute adjusted p values with pre-filtering |
| sel_qval | Compute q values with pre-filtering |
| shifter | Shifts vector by cyclic permutation |
| sourcebioc | Loads biocLite() from bioconductor.org |
| split024intervals | Split data frame containing ZTs over the 24/0 border |
| var_value_string | Converts parameters to a string of par__value pairs |
| ztct_string | Convert Zeitgeber Time Points to Character Strings with... |
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