docs/02-outliers.md

In ppernot/ErrView: Analysis of error sets

Outliers module

This module enables to identify and select global outliers, i.e., systems that are poorly predicted by all methods in the set.

The presence of global outliers has a strong impact on some shape and ranking statistics [1].

They typically originate from problematic experimental reference data, or from a common shortcoming in all the compared methods. In any case, they should be handled with care.

Controls

• Scaled error: centering and rescaling of errors by their per-method standard deviation

• Labels Thresh.: threshold (in scaled errors units) to display systems labels

• Scramble points: add a random shift to the points abscissae for better separation

• Methods Clustering: ordering the methods as resulting from a clustering of the error sets

• Outliers selector

  • No: do not select outliers

  • Q + IQR: selection based on the interquartile range

  • CI90: selection based on the 90% confidence intervals

  • CI95: selection based on the 95% confidence intervals

• Labels size: tweak the size of systems labels

• Methods size: tweak the size of the methods name

Plot

Parellel plot of the error sets with delimitation of the outliers selection zone and tagging of the global outliers.

References

1. P. Pernot and A. Savin (2020) Probabilistic performance estimators for computational chemistry methods: Systematic Improvement Probability and Ranking Probability Matrix. I. Theory. J. Chem. Phys. 152:164108. http://dx.doi.org/10.1063/5.0006202

ppernot/ErrView documentation built on Jan. 30, 2022, 6:59 a.m.