CrossSpecies_Conversion: ELeFHAnt CrossSpecies_Conversion

In praneet1988/ELeFHAnt: Ensemble Learning for Harmonization and Annotation of Single Cells

ELeFHAnt CrossSpecies_Conversion

Description

CrossSpecies_Conversion is a function to convert gene names of a or more seurat objects from one species to other. For example: if your data comes from mouse and you want to compare to human then you can use this function to convert. Currently we support following species: human, mouse, rhesus, zebrafish, chicken and rat

Usage

CrossSpecies_Conversion(
  seurat.objects = c(),
  species_from = NULL,
  species_to = NULL,
  format_from = NULL,
  format_to = NULL
)

Arguments

seurat.objects	one or more seurat objects
species_from	current species: human, mouse, rhesus, zebrafish, chicken and rat
species_to	convert to: human, mouse, rhesus, zebrafish, chicken and rat
format_from	which format genes are present in the object: ensembl or symbol
format_to	which format genes should be converted to: ensembl or symbol

Value

Cross-species converted Seurat Object

Author(s)

Praneet Chaturvedi & Konrad Thorner

praneet1988/ELeFHAnt documentation built on July 20, 2022, 7:29 p.m.