API for princeew/PFFindR
Identify, evaluate, and visualize enriched Prix Fixe subnetworks
| Global functions | |
|---|---|
| .get_gene_options | Source code |
| .mateNetworks | Source code |
| .maybeMutateLocus | Source code |
| .mutateNetwork | Source code |
| .plot_circle | Source code |
| .plot_loci | Source code |
| .plot_locus | Source code |
| .row_parser | Source code |
| .scoreGenes | Source code |
| .select_genes | Source code |
| .select_unique_genes | Source code |
| .update_gene_entry | Source code |
| Locus-class | Man page |
| PFData-class | Man page |
| PFDataLoader | Man page Source code |
| PF_FanconiAnemia | Man page |
| PrixFixeNetwork-class | Man page |
| basic_run | Source code |
| calculateAdjacencyMatrix | Man page Source code |
| calculateGeneScores | Man page Source code |
| check_and_maybe_install_dependencies | Source code |
| compileLoci | Man page Source code |
| constructCandidateNetwork | Man page Source code |
| evaluatePopulationSignficance | Man page Source code |
| evolve | Source code |
| findPFNetworks | Source code |
| getDegreeInfo | Man page Source code |
| getNetworkDensity | Man page Source code |
| getTopNetwork | Man page Source code |
| initializePopulation | Man page Source code |
| loadCFNData | Man page Source code |
| loadLociData | Man page Source code |
| load_arguments | Source code |
| main | Source code |
| make_progress_bar | Man page Source code |
| mateNetworks | Source code |
| mutateNetworks | Source code |
| read_data_func | Man page Source code |
| resample_from_bin | Man page Source code |
| sampleLoci | Man page Source code |
| saveGeneScores | Source code |
| saveNetwork | Source code |
| synthesizeNullMembers | Man page Source code |
| synthesize_null_member | Man page Source code |
| viewGeneScores | Man page Source code |
