Files in princeew/PFFindR
Identify, evaluate, and visualize enriched Prix Fixe subnetworks
.DS_Store
.RData
.Rbuildignore
.Rhistory
.Rproj.user/A6D743CE/cpp-definition-cache
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.github/workflows/r.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
PFFindR.Rproj
R/.DS_Store
R/Locus.R
R/PFData.R
R/PFDataLoader.R
R/PrixFixeNetwork.R
R/README.md
R/calculateAdjacencyMatrix.R
R/calculateGeneScore.R
R/compileLoci.R
R/constructCandidateNetwork.R
R/data.R
R/dopar_progress_bar.R
R/evaluatePopulationSignificance.R
R/evolve.R
R/examples/basic_run.R
R/findPFNetworks.R
R/getDegreeInfo.R
R/getNetworkDensity.R
R/getTopNetwork.R
R/initializePopulation.R
R/loadCFNData.R
R/loadLociData.R
R/mateNetworks.R
R/mutateNetworks.R
R/read_data_func.R
R/resample_from_bin.R
R/sampleLoci.R
R/saveGeneScores.R
R/saveNetwork.R
R/synthesizeNullMembers.R
R/synthesize_null_member.R
R/viewGeneScores.R
README.md
data/PF_FanconiAnemia.rda
man/Locus-class.Rd
man/PFData-class.Rd
man/PFDataLoader.Rd
man/PF_FanconiAnemia.Rd
man/PrixFixeNetwork-class.Rd
man/calculateAdjacencyMatrix.Rd
man/calculateGeneScores.Rd
man/compileLoci.Rd
man/constructCandidateNetwork.Rd
man/evaluatePopulationSignficance.Rd
man/getDegreeInfo.Rd
man/getNetworkDensity.Rd
man/getTopNetwork.Rd
man/initializePopulation.Rd
man/loadCFNData.Rd
man/loadLociData.Rd
man/make_progress_bar.Rd
man/read_data_func.Rd
man/resample_from_bin.Rd
man/sampleLoci.Rd
man/synthesizeNullMembers.Rd
man/synthesize_null_member.Rd
man/viewGeneScores.Rd
scripts/PFFind.R
