Man pages for princeew/PFFindR
Identify, evaluate, and visualize enriched Prix Fixe subnetworks
| calculateAdjacencyMatrix | 'calculateAdjacencyMatrix' |
| calculateGeneScores | Calculate the Prix Fixe gene score |
| compileLoci | 'compileLoci' |
| constructCandidateNetwork | 'constructCandidateNetwork' |
| evaluatePopulationSignficance | Determine the significance of a population of... |
| getDegreeInfo | 'getDegreeInfo' |
| getNetworkDensity | 'getNetworkDensity' |
| getTopNetwork | Extract the top network from a population |
| initializePopulation | Initialize a population of 'PrixFixeNetwork's |
| loadCFNData | 'loadCFNData' |
| loadLociData | 'loadLociData' |
| Locus-class | An S4 class to represent a Locus |
| make_progress_bar | 'dopar_progress_bar' |
| PFData-class | An S4 class for storing the input dataset for PrixFixeNetwork... |
| PFDataLoader | Build a 'PFData' Object |
| PF_FanconiAnemia | PFData Object of FA genes |
| PrixFixeNetwork-class | An S4 class to represent a PrixFixeNetwork |
| read_data_func | 'read_data_func' |
| resample_from_bin | 'resample_from_bin' |
| sampleLoci | 'sampleLoci' |
| synthesize_null_member | 'synthesize_null_member' |
| synthesizeNullMembers | 'synthesizeNullMembers' |
| viewGeneScores | Visualize gene contribution scores for a Prix Fixe network |
