pulseox_invalid: Getting Invalid Examples and Summaries for...

In princeofbrit/Biosensequlaty_BZ: A Data Quality Report Generator for NSSP BioSense Platform

Description

This function will generate two data frames: first, a frame to be used later to extract invalid examples from; second, a frame that contains facility-level summaries for counts and percentages of pulse oximetry invalids.

Usage

pulseox_invalid(data)

Arguments

data	The raw data from BioSense on which you will do the invalid pulse oximetry checks.

Details

The valid values were taken from the 'PHVS_PulseOximetryUnit_UCUM_V1.xls' file from Public Health Information Network Vocabulary Access and Distribution System value sets (https://phinvads.cdc.gov/vads/ViewView.action?name=Syndromic be updated as the CDC provides new or different codes that are considered valid or invalid.

You can view the concept names that are considered valid by calling 'data("pulse_oximetry_units")'.

This function will do four invalid checks: Initial_Pulse_Oximetry is considered invalid if it is above 100 or less than 50; Initial_Pulse_Oximetry_Units are considered invalid if they are not in the valid concept names; Initial_Pulse_Oximetry is considered invalid if Units are not reported; lastly, Initial_Pulse_Oximetry_Units are considered invalid if a corresponding Initial_Pulse_Oximetry is not reported.

Value

A list of two data frames: examples and summary for Initial_Pulse_Oximetry and Initial_Pulse_Oximetry_Units.

princeofbrit/Biosensequlaty_BZ documentation built on Sept. 1, 2020, 6:46 p.m.