pgxMetaplot: Plot survival data of individuals

In progenetix/pgxRpi: R wrapper for Progenetix

Plot survival data of individuals

Description

This function provides the survival plot from individual metadata.

Usage

pgxMetaplot(data, group_id, condition, return_data = FALSE, ...)

Arguments

data	The meatdata of individuals returned by pgxLoader function.
group_id	A string specifying which column is used for grouping in the Kaplan-Meier plot.
condition	Condition for splitting individuals into younger and older groups. Only used if group_id is age related.
return_data	A logical value determining whether to return the metadata used for plotting. Default is FALSE.
...	Other parameters relevant to KM plot. These include pval, pval.coord, pval.method, conf.int, linetype, and palette (see ggsurvplot from survminer)

Value

The KM plot from input data

Examples

individuals <- pgxLoader(type="individual",filters="NCIT:C3512")
pgxMetaplot(individuals, group_id="age_iso", condition="P65Y")

progenetix/pgxRpi documentation built on July 2, 2024, 7:07 a.m.