computeFDR: Compute FDR given a score Same as computeFDRwithID but works...
In protViz/TargetDecoyFDR: Compute False Discovery Rates Given Score and Target Decoy Information
Description
Usage
Arguments
Value
Description
Compute FDR given a score
Same as computeFDRwithID but works with decoy_hit boolean vector
Usage
1
computeFDR(score, decoy_hit, larger_better = TRUE)
Arguments
score
score
decoy_hit
indicates if decoy hit
larger_better
is larger score the better one (default TRUE)
Value
list with decoy_hit (indicates if decoy), score the search engine score,
FDR1 false discovery rate estimated using the method of Gygi, SimpleFDR - estimated using the method of Kaell.
protViz/TargetDecoyFDR documentation built on May 26, 2019, 9:37 a.m.
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Description Usage Arguments Value
Description
Compute FDR given a score Same as computeFDRwithID but works with decoy_hit boolean vector
Usage
1 | computeFDR(score, decoy_hit, larger_better = TRUE)
|
Arguments
score |
score |
decoy_hit |
indicates if decoy hit |
larger_better |
is larger score the better one (default TRUE) |
Value
list with decoy_hit (indicates if decoy), score the search engine score, FDR1 false discovery rate estimated using the method of Gygi, SimpleFDR - estimated using the method of Kaell.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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