Cdsw-class: Compute dynamic swath windows

Description Fields Methods Examples

Description

Compute dynamic swath windows

Fields

masses

MS1 masses

breaks

the breaks

nbins

number of bins

digits

mass accuracy in result

Methods

asTable(overlap = 1)

make windows

error()

show error

optimizeWindows(digits = 1, maxbin = 15, plot = FALSE, overlap = 0)

optimizes the windows

quantile_breaks(digits = 2)

same number of MS1 in each window but might violate hard constraints

sampling_breaks(maxwindow = 150, minwindow = 5, digits = 2, plot = FALSE)

starts with quantile breaks but mixes with uniform data to satisfy had constraints

showCycle(overlap = 1)

shows the generated DIA cycle

Examples

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library(cdsw)
cdsw <- Cdsw(masses)
cdsw$sampling_breaks(maxwindow=100,plot=TRUE)
cdsw$plot()
cdsw$asTable()
cdsw$breaks

protViz/cdsw documentation built on May 19, 2020, 1:03 a.m.