Prior: List of priors

In psadil/nmmr: NeuroModulation Modeling in R

Description

List of priors

List of priors

Public fields

sigma_loc

σ_{loc} ~ gamma(sigma_loc[1], sigma_loc[2])

sigma_scale

σ_{scale} ~ gamma(sigma_scale[1], sigma_scale[2])

gamma_loc

γ_{loc} ~ normal(0, gamma_loc[2])

gamma_scale

γ_{scale} ~ gamma(gamma_scale[1], gamma_scale[2])

kappa_loc

κ_{loc} ~ gamma(kappa_loc[1], kappa_loc[2])

kappa_scale

κ_{scale} ~ gamma(kappa_scale[1], kappa_scale[2])

alpha_loc

α_{loc} ~ normal(alpha_loc[1], alpha_loc[2])

alpha_scale

α_{scale} ~ gamma(alpha_scale[1], alpha_scale[2])

ntfp_loc

ntfp_{loc} ~ normal(ntfp_loc[1], ntfp_loc[2])

ntfp_scale

ntfp_{scale} ~ gamma(ntfp_scale[1], ntfp_scale[2])

Methods

Public methods

• Prior$new()

• Prior$as_list()

• Prior$clone()

---

Method new()

Create a new Model object. All values must be greater than 0.

Usage

Prior$new(
  sigma_loc = c(2, 1/2),
  sigma_scale = c(2, 1/2),
  gamma_loc = 5,
  gamma_scale = c(2, 1/20),
  kappa_loc = c(3, 1),
  kappa_scale = c(3, 1),
  alpha_loc = c(0, 5),
  alpha_scale = c(2, 1/2),
  ntfp_loc = 0.5,
  ntfp_scale = c(2, 3)
)

Arguments

sigma_loc

vector of length 2

sigma_scale

vector of length 2

gamma_loc

real

gamma_scale

vector of length 2

kappa_loc

vector of length 2

kappa_scale

vector of length 2

alpha_loc

vector of length 2

alpha_scale

vector of length 2

ntfp_loc

real

ntfp_scale

vector of length 2

Returns

A new Prior object.

---

Method as_list()

Convert object to a list. This is useful when passing data to Stan

Usage

Prior$as_list()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

Prior$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

psadil/nmmr documentation built on June 13, 2021, 11:42 a.m.