multigraph: Class "multiGraph"
In pshannon-bioc/graph: graph: A package to handle graph data structures
Description
Objects from the Class
Slots
Methods
Description
A collection of classes to model multigraphs. These
include the multiGraph class as well as classes to contain edge sets.
Objects from the Class
Objects can be created from the multiGraph class, the
edgeSet class is virtual, and particular variants should be used.
Slots
These slots are for the multiGraph class.
- nodes
The names of the nodes.
- edgeL
A list of edge lists.
- nodeData
An instance of the attrData class.
- graphData
A list.
These slots are for the edgeSet class, or one of its
sublcasses.
- edgeData
An instance of the attrData class.
- edgemode
A character vector, one of directed, or undirected.
- edgeL
A list of the edges (graphNEL)
- adjMat
An adjacency matrix (graphAM)
Methods
- show
Print a multigraph.
- isDirected
A vector indicating which of the edgeSets is
directed.
- nodes
Retrieve the node names
- numNodes
Return the number of nodes
- edges
Return either all edges, or a subset of them, depending
on the arguments supplied.
- numEdges
Return a vector with the number of edges, for each
edge set.
pshannon-bioc/graph documentation built on May 26, 2019, 10:32 a.m.
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Description Objects from the Class Slots Methods
Description
A collection of classes to model multigraphs. These include the multiGraph class as well as classes to contain edge sets.
Objects from the Class
Objects can be created from the multiGraph class, the
edgeSet class is virtual, and particular variants should be used.
Slots
These slots are for the multiGraph class.
- nodes
The names of the nodes.
- edgeL
A list of edge lists.
- nodeData
An instance of the
attrDataclass.- graphData
A list.
These slots are for the edgeSet class, or one of its
sublcasses.
- edgeData
An instance of the
attrDataclass.- edgemode
A character vector, one of directed, or undirected.
- edgeL
A list of the edges (graphNEL)
- adjMat
An adjacency matrix (graphAM)
Methods
- show
Print a multigraph.
- isDirected
A vector indicating which of the edgeSets is directed.
- nodes
Retrieve the node names
- numNodes
Return the number of nodes
- edges
Return either all edges, or a subset of them, depending on the arguments supplied.
- numEdges
Return a vector with the number of edges, for each edge set.
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