treelist_to_paths: Compute paths from a list of trees

In pspc-data-science/branchsim: Gamma negative binomial branching process simulation of epidemics

Description

This function computes paths from all trees at once; it is much faster than iterating over trees (e.g. as one would do using purrr::map).

Usage

treelist_to_paths(treelist, tmax, equalize = TRUE)

Arguments

treelist	A list of lists. Each sublist corresponds to a single tree (i.e. a simulated path). Each tree is itself a list of tibbles, with one tibble for each depth level.
tmax	A positive scalar. The cut point for paths.
equalize	A logical scalar. If TRUE, make all paths end at t_max by calling equalize_paths.

Value

A data.frame with columns id_sim (unique path ID), time, n_infected (cumulative number infected – strictly increasing), n_infectious (number currently infectious).

pspc-data-science/branchsim documentation built on Jan. 19, 2021, 10:10 a.m.