Man pages for pujana-lab/systematicQTL
Pipeline to run sistematically QTL analysis

build_cross2_datasetbuild_cross2_dataset
build_genescan_plotDraw genescan peaks plot
build_genescan_plot-QtlWrapper-methodDraw genescan peaks plot
build_pdx_plotDraw genescan peaks plot
build_pdx_plot-QtlWrapper-methodDraw genescan peaks plot
find_peaksFinds the peaks passing lod values.
find_peaks-QtlWrapper-methodFinds the peaks passing lod values. This method should be...
lodRetrieves real values LOD scores from a QTL wrapper object....
lod-QtlWrapper-methodRetrieves real values LOD scores from a QTL wrapper object....
QtlWrapperQtlWrapper constructor
QtlWrapper-classQtl Object wrapper class.
set_empirical_significance_lodSets significance LOD threshold empirically using permutation...
set_empirical_significance_lod-QtlWrapper-methodSets significance LOD threshold empirically using permutation...
set_significance_lodSets significance LOD threshold for alpha < 0.05 manually.
set_significance_lod-QtlWrapper-methodSets significance LOD threshold for alpha < 0.05 manually.
to_csvs_genoCombine markers map and genotypes dataframe
write_csvs_genoHelper function to export csvs_geno dataset in correct format...
pujana-lab/systematicQTL documentation built on June 15, 2020, 12:44 p.m.