build_cross2_dataset | build_cross2_dataset |
build_genescan_plot | Draw genescan peaks plot |
build_genescan_plot-QtlWrapper-method | Draw genescan peaks plot |
build_pdx_plot | Draw genescan peaks plot |
build_pdx_plot-QtlWrapper-method | Draw genescan peaks plot |
find_peaks | Finds the peaks passing lod values. |
find_peaks-QtlWrapper-method | Finds the peaks passing lod values. This method should be... |
lod | Retrieves real values LOD scores from a QTL wrapper object.... |
lod-QtlWrapper-method | Retrieves real values LOD scores from a QTL wrapper object.... |
QtlWrapper | QtlWrapper constructor |
QtlWrapper-class | Qtl Object wrapper class. |
set_empirical_significance_lod | Sets significance LOD threshold empirically using permutation... |
set_empirical_significance_lod-QtlWrapper-method | Sets significance LOD threshold empirically using permutation... |
set_significance_lod | Sets significance LOD threshold for alpha < 0.05 manually. |
set_significance_lod-QtlWrapper-method | Sets significance LOD threshold for alpha < 0.05 manually. |
to_csvs_geno | Combine markers map and genotypes dataframe |
write_csvs_geno | Helper function to export csvs_geno dataset in correct format... |
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