to_csvs_geno: Combine markers map and genotypes dataframe
In pujana-lab/systematicQTL: Pipeline to run sistematically QTL analysis
Description
Usage
Arguments
Details
Value
Description
Combine markers map and genotypes dataframe
Usage
1
to_csvs_geno(markers_map, genotypes)
Arguments
markers_map
Dataset with markers
genotypes
Dataset with phenotypes
Details
Markers map file should contain 3 columns:
- marker: Genomic marker Name (snp id for example)
- chr: Chromosome
- cm: Distance in centimorgans
Genotypes file must be a data frame containing at least a numeric "id" column and the markers in same order than markers map.
Value
DataFrame for genotypes mapped in CSVS format
pujana-lab/systematicQTL documentation built on June 15, 2020, 12:44 p.m.
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Description Usage Arguments Details Value
Description
Combine markers map and genotypes dataframe
Usage
1 | to_csvs_geno(markers_map, genotypes)
|
Arguments
markers_map |
Dataset with markers |
genotypes |
Dataset with phenotypes |
Details
Markers map file should contain 3 columns:
- marker: Genomic marker Name (snp id for example) - chr: Chromosome - cm: Distance in centimorgans
Genotypes file must be a data frame containing at least a numeric "id" column and the markers in same order than markers map.
Value
DataFrame for genotypes mapped in CSVS format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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