check_pedig_id: Check Animal IDs in Pedigrees

In pvrqualitasag/qprppedigree: Checking Pedigrees for PopReport

Description

The software system PopReport analyses pedigrees. The pedigrees used as input must satisfy certain criteria. This function checks the required properties of animal IDs in a pedigree. Animal IDs in a pedigree are the primary keys that identify the individuals.

The main property of the animal IDs consists of their uniqueness. The output of this function shows potential duplicate IDs.

Usage

check_pedig_id(
  ps_pedig_path,
  ps_delim = "|",
  ps_id_col = "#IDTier",
  pcol_types = NULL,
  ptbl_pedigree = NULL
)

Arguments

ps_pedig_path	path to the pedigree input file
ps_delim	column delimiting character
ps_id_col	column title where animal ID is contained
pcol_types	column types of pedigree in ps_pedig_path
ptbl_pedigree	tibble containing the pedigree, obtained by read_prp_pedigree()

Value

list of pedigree characteristics

Examples

## Not run: 
check_pedig_id(ps_pedig_path = system.file('extdata',
    'PopReport_SN_ohne_20210115.csv_adaptfin2.csv',
  package = 'qprppedigree'))

## End(Not run)

pvrqualitasag/qprppedigree documentation built on March 18, 2021, 7:34 a.m.