top: Show top-ranking genes

In pwirapati/acdx: Aggregated Cell Differential Expression

Description

Sort, show and select top-ranking genes from a significance testing summary matrix.

Usage

  top( 
    mtp,
    sort.by="T",
    aux=NULL,
    n=Inf,
    decreasing=T,
    ...    # other options for sort.list
    )

Arguments

mtp	Multiple-testing objects, such as the result of bremt
sort.by	Sorting rules. Can be a vector of selected column names in sigsum and aux. Ordering is prioritized according to the given order (left first). A prefix "-" to the name reverses the direction of the sort.
aux	Additional columns to be appending the results. It has to be a dataframe or matrix in the same gene order as sigsum. It can contain non-numeric values. In addition to be displayed together, the columns of aux can be used in the sorting keys.
n	The number of rows shown. Any values outside 1:nrow(sigsum) (including non-numeric or NA) is interpreted as all rows.
decreasing	The default sorting direction, if the key is not prefixed by "-".
...	Other options for order

Examples

  ## see the 'quick tutorial'

pwirapati/acdx documentation built on Jan. 11, 2021, 12:31 a.m.