In pzhaonet/rosr: Create Reproducible Research Projects

Introduction

This template comes from the R 'bookdownplus' package and modified by Peng Zhao. It intends to show how to cross refer other files in a 'rosr' project, rather than to show how to use the 'bookdownplus' template or the 'bookdown' package. .

Methods

Set up

Firstly, we switch off the codes and message display in a manuscript, and set the working directory to the rosr project.

oldwd <- getwd()
knitr::opts_chunk$set(echo = TRUE, warning = FALSE, message = FALSE) 
knitr::opts_knit$set(root.dir = dirname(dirname(oldwd)))

Load data

Now we can use the relative path. Let's sync the bib file and run an R script.

file.copy('bib/rosr.bib', paste0(oldwd, '/bib/rosr.bib'))
source('R/rosr.R')

Cite

Here we cite something like this:

Many R packages have been developed recently [@R-pinyin; @R-beginr; @R-bookdownplus; @R-mindr; @R-rmd; @R-steemr].

Results and Discussions

Numbers

As we just ran the source() command, we can use the results from the R/rosr.R. For example, the mean temperature is r temperature degree.

Tables

We could insert a table as in Table \@ref(tab:tab-lab).

knitr::kable(head(aq), booktabs = TRUE, caption = 'Air quality data.')

Figures

Plot the data in a diagram as shown in Fig. \@ref(fig:fig-lab).

plot(aq)

We could insert an image like Fig \@ref(fig:img-lab).

fig('rosr_R.png')

Equations

Use the rosr::eq() function to insert an equation. See Eq. \@ref(eq:sd)

eqs <- 'equation/rosr-eq.Rmd'
eq(eqs, label = 'sd')

Conclusions

The conclusion goes here.

pzhaonet/rosr documentation built on June 28, 2020, 10:32 a.m.