experiment.cmd: Generate the command template to configure and run a...

In qBioTurin/epimod: Epidemiological modelling (epimod)

Generate the command template to configure and run a simulation

Description

Function generating the command line used to run the solver with the appropriate configuration

Usage

experiment.cmd(
  solver_fname,
  solver_type = "LSODA",
  taueps = 0.01,
  seed,
  timeout
)

Arguments

solver_fname	the solver executable file
solver_type	the type of solver (LSODA, HLSODA, ..)
taueps	controls the time step for tau-leap algorithm
timeout	available time to run n_run simulations (See TIMEOUT(1) to check the syntax)
event_times	times at which the marking is updated through the event_function
event_function	specifies the rule to update the marking
out_fname	output filename prefix

Value

a string

Author(s)

Paolo Castagno, Simone Pernice

Examples

## Not run: 
experiment.cmd(id=1, solver_fname="Solver.solver", s_time=365, f_time=730, timeout="1d", out_fname="simulation")


## End(Not run)

qBioTurin/epimod documentation built on June 29, 2024, 8:53 a.m.