Man pages for qenvio/hicutils

get_contacts_matrixMake a contact matrix from HiC data
get_contacts_per_binRetrieve HiC data per genomic bin
ICEQuick and dirty implementation of ICE matrix normalization
logfiniteLog-transform a vector and substitute infinite values by 'NA'
logpseudoAdd pseudo counts to a vector and Log-transform it
make_binsBin the genome
plot_matrixPlot HiC contact matrix
simetrize_matrixGet the full symetric matrix from a upper triangular contact...
subsample_matrixSub sample a HiC contact matrix
upper_triGet upper triangular matrix from a HiC contact matrix
qenvio/hicutils documentation built on May 26, 2019, 11:35 a.m.