Description Usage Format Details Source References Examples
Object b
contains real counted kmer frequency data from Glycine latifolia whole genome sequencing project.
This data is the output from function count
in jellyfish
with k-mer length of 30.
1 | data("b")
|
Real dateset with 10001 observations on the following 2 variables.
frequency
The frequency of kmer
counts
The counts of kmer at different frequencies
The data set comes with 10001 observations with 2 variable. The First column is named with "frequency" whch records the frequency of kmer, and the second column is named with "counts" which records the number of kmers at certain frequency in the data set.
Real data calculated from Glycine latifolia sequencing reads sequenced on two lanes of Hiseq 2500.
More details about jellyfish
software and its function could be found at:
http://www.cbcb.umd.edu/software/jellyfish/
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