calc_beta | Estimates beta from a given R0 |
calc_dist_kernel | Calculates the spatial kernel values |
calc_dist_mat | Calculates the distance matrix |
fit_beta | Fits the incidence from one resolution to another via beta |
fit_mult | Fits the incidence from one resolution to another via a... |
load_contact_mat | Creates the age mixing matrix |
plot_simulation | Plots the SIR epidemic from the simulation |
prep_simulation | Performs pre-calculations necessary for the simulation of an... |
run_multi_stoch | Runs multiple stochastic simulations |
run_simulation | Runs the spatial epidemic simulation |
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