set_params: Create the transmission kernel parameters

In qleclerc/spatial_phage: Spatial sim of bacteria and phages

Description

This is needed to execute the update_all and simulate_all functions

Usage

set_params(
  size = 250,
  rep_bac = 2,
  rep_bac_res = 2,
  movement_bac = 10,
  abx_con = 0,
  mutate_bac = 0,
  movement_pha = 10,
  beta = 0.5,
  burst = 10,
  trans = 0.1,
  decay = 0.5
)

Arguments

size	The size of the space within which the bacteria and phage can move.
rep_bac	Replication rate of bacteria
rep_bac_res	Replication rate of resistant bacteria
movement_bac	The maximum distance that bacteria can move during one generation
movement_pha	The maximum distance that phage can move during one generation
beta	Phage infection probability
burst	Phage burst size
trans	Probability of transduction instead of normal replication

Value

A vector containing the parameter values

Examples

params = set_params()

qleclerc/spatial_phage documentation built on Dec. 4, 2020, 10:11 p.m.