Description Usage Arguments Value See Also
visualize ego gene X, its k step neighbours, and the W gene communities: Generate a graph
with different community in different colors.
visualize.community()
is used to create a graph to display the layout of genes X, X's k-step neighborhood, W and their corresponding community.
1 2 | visualize.community(graph, kernel.result, x, k = 2, cutoff = 1,
community.min = 5, path = NULL)
|
graph |
The igraph object of gene network. |
kernel.result |
The result of graph.kd which finds genes W of a gene X. |
x |
The gene the plot is generated for. |
k |
The degree of the neighborhood of X. |
cutoff |
A threshold to filter gene W. |
path |
The path where the result graph is saved to. The default path is the original path of input graph. |
cummunity.min |
The minimum size of the community of W. |
a graph displays genes X, X's k-step neighborhood, and W gene communities in different colors.
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