In quang-huynh/RBassess: An Age- And Length-Based Assessment Model for Rainbow Trout in British Columbia, Canada

knitr::opts_chunk$set(
  collapse = TRUE, echo = FALSE,
  fig.width = 6, fig.height = 4.5,
  out.width = "650px",
  comment = "#>"
)

Summary of Posterior Mode {.tabset}

Data and Model Fits

plot_age_length(x@RBdata, x, bubble = bubble)

plot_age_length_residual(x, bubble = bubble, add_title = FALSE)

plot_length(x@RBdata, x)

plot_length_residual(x, ylab = "Standardized Pearson Residual")

plot_stocking_density(x@RBdata)

plot_Lstart(x@RBdata)

plot(x@RBdata@Age, x@RBdata@Age_adjust, xlab = "Integer Age", ylab = "Accumulated growing degree time (years)",
     typ = "o", pch = 16)
abline(a = 0, b = 1, lty = 2)

Parameter Estimates

generate_summary_table(x)

plot_selectivity(x)

plot_F_diagnostic(x)

Posterior Distribution

plot_pars(RBdata = x@RBdata, RBfit = x, plot.title = "", plot_type = "posterior_mode")

R version

This report was generated on: r Sys.time()

r R.version.string
RBassess version r packageVersion('RBassess')

quang-huynh/RBassess documentation built on May 8, 2019, 7:30 a.m.