Files in quick2063706271/Cov2Comparator
Analyzing SARS covid-2 genome across different geographic regions
.DS_Store
.Rbuildignore
.gitignore
Cov2Comparator.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/phylogeneticTree.R
R/readData.R
R/runCov2Comparator.R
R/sequenceComparison.R
R/sysdata.rda
README.Rmd
README.md
data/simpleAlign.rda
inst/.DS_Store
inst/extdata/MN985325.1.fasta
inst/extdata/MT066156.1.fasta
inst/extdata/MW309440.1.fasta
inst/extdata/NC_045512.2.fasta
inst/extdata/nameToCountry.txt
inst/extdata/overviewCov2.png
inst/shiny-scripts/app.R
man/createTree.Rd
man/figures/README-pressure-1.png
man/getSequenceByRegion.Rd
man/getSequencesByRegions.Rd
man/multipleSeqAlign.Rd
man/plotAlignment.Rd
man/plotTree.Rd
man/readGenome.Rd
man/readNameToRegions.Rd
man/runCov2Comparator.Rd
man/simpleAlign.Rd
man/unionDNASets.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-MsaAndPhylo.R
tests/testthat/test-createTree.R
tests/testthat/test-getSequenceByRegion.R
tests/testthat/test-getSequencesByRegions.R
tests/testthat/test-multipleSeqAlign.R
tests/testthat/test-plotAlignment.R
tests/testthat/test-plotTree.R
tests/testthat/test-readGenome.R
tests/testthat/test-unionDNASets.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/Cov2Comparator.Rmd
vignettes/MSAPlotWithNucleotide.png
vignettes/MultipleSeqAlignPlot.png
vignettes/treeCladogram.png
vignettes/treeWithName.png
vignettes/treeWithoutName.png
