unionDNASets: Union two DNAStringSet
In quick2063706271/Cov2Comparator: Analyzing SARS covid-2 genome across different geographic regions
Description
Usage
Arguments
Value
References
Examples
Description
A function that takes two DNAStringSet and union them into one.
Usage
1
unionDNASets(set1, set2)
Arguments
set1
A DNAStringSet contains DNA sequence
set2
A DNAStringSet contains DNA sequence
Value
Returns a DNAStringSet with sequences contained in set1 and set2.
References
H. Pagès, P. Aboyoun, R. Gentleman and S. DebRoy (2020). Biostrings:
Efficient manipulation of biological strings.
R package version 2.58.0. https://bioconductor.org/packages/Biostrings
Paradis E. & Schliep K. 2019. ape 5.0: an environment for modern
phylogenetics and evolutionary
analyses in R. Bioinformatics 35: 526-528.
Examples
1
2
3
4
5
6
# Example 1
library(Biostrings)
set1 <- Biostrings::DNAStringSet("ATCGATCG")
set2 <- Biostrings::DNAStringSet("ATTTTTTT")
set3 <- Biostrings::DNAStringSet("ATCGATTT")
setTotal <- unionDNASets(set1, set2)
quick2063706271/Cov2Comparator documentation built on Dec. 22, 2021, 10:59 a.m.
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Description Usage Arguments Value References Examples
Description
A function that takes two DNAStringSet and union them into one.
Usage
1 | unionDNASets(set1, set2)
|
Arguments
set1 |
A DNAStringSet contains DNA sequence |
set2 |
A DNAStringSet contains DNA sequence |
Value
Returns a DNAStringSet with sequences contained in set1 and set2.
References
H. Pagès, P. Aboyoun, R. Gentleman and S. DebRoy (2020). Biostrings: Efficient manipulation of biological strings. R package version 2.58.0. https://bioconductor.org/packages/Biostrings
Paradis E. & Schliep K. 2019. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics 35: 526-528.
Examples
1 2 3 4 5 6 | # Example 1
library(Biostrings)
set1 <- Biostrings::DNAStringSet("ATCGATCG")
set2 <- Biostrings::DNAStringSet("ATTTTTTT")
set3 <- Biostrings::DNAStringSet("ATCGATTT")
setTotal <- unionDNASets(set1, set2)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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