OptimBFA: Optimize parameters of BFA's likelihood function

Description Usage Arguments Value

View source: R/BFA.R

Description

Optimize parameters of BFA's likelihood function

Usage

1
OptimBFA(modelEnv, maxit, method)

Arguments

modelEnv

Environment variable contains parameter space, and global variables such as N,G,C,detection matrix B, etc

maxit

Maximum number of iteration with respect to objective function, default is 300 iterations

method

Optimization method, default is the conjugate gradient approach L-BFGS-B is recommended for smaller dataset less than 10k cells

Value

The entire model environment


quon-titative-biology/scBFA documentation built on March 24, 2020, 7:30 p.m.