Version: 0.8
checking examples ... ERROR ``` Running examples in ‘DBI-Ex.R’ failed The error most likely occurred in:
Name: DBI-package
Title: DBI: R Database Interface
Aliases: DBI DBI-package
** Examples
RSQLite::SQLite() Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : namespace ‘DBI’ 0.8 is already loaded, but >= 0.8.0.9001 is required Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted ```
Version: 0.5.1
checking examples ... ERROR ``` ...
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
To connect to a database first create a src:
dbdir <- file.path(tempdir(), "dplyrdir") my_db <- MonetDBLite::src_monetdblite(dbdir)
copy some data to DB
my_iris <- copy_to(my_db, iris) Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. Error in .local(conn, statement, ...) : Unable to execute statement 'ROLLBACK'. Server says 'Invalid connection'. Calls: copy_to ... dbRollback -> dbRollback -> dbSendQuery -> dbSendQuery -> .local Execution halted ```
Version: 2.4.0
checking examples ... ERROR ``` Running examples in ‘DECIPHER-Ex.R’ failed The error most likely occurred in:
Name: Add2DB
Title: Add Data to a Database
Aliases: Add2DB
** Examples
Create a sequence database
gen <- system.file("extdata", "Bacteria_175seqs.gen", package="DECIPHER") dbConn <- dbConnect(SQLite(), ":memory:") Seqs2DB(gen, "GenBank", dbConn, "Bacteria")
Reading GenBank file chunk 1Error: field.types
must be a named character vector with unique names, or NULL
Execution halted
```
checking running R code from vignettes ... ``` ...
dbConn <- dbConnect(SQLite(), ":memory:")
Seqs2DB(gb, "GenBank", dbConn, "Bacteria")
Reading GenBank file chunk 1
When sourcing ‘DesignProbes.R’:
Error: field.types
must be a named character vector with unique names, or NULL
Execution halted
when running code in ‘DesignSignatures.Rnw’
...
dbConn <- "<>"
dbConn <- dbConnect(SQLite(), ":memory:")
N <- Seqs2DB(fas, "FASTA", dbConn, "")
Reading FASTA file chunk 1
When sourcing ‘DesignSignatures.R’:
Error: field.types
must be a named character vector with unique names, or NULL
Execution halted
```
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.